SNP Profiles matching CRU 156

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_Input profile	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
1._CRU_156	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
2._CRU_156	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
3._CRU_156	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
4._CRU_156	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
5._GC-01-131-7-08	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
6._GC-01-131-7-08	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
7._GC-01-131-7-08	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
8._GC-01-131-7-08	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
9._GC-01-131-7-08	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
10._RUQ_1312	_	AA	CG	CT	_	_	_	GT	_	_	_	_	CT	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
1._CRU_156	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
2._CRU_156	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
3._CRU_156	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
4._CRU_156	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
5._GC-01-131-7-08	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
6._GC-01-131-7-08	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
7._GC-01-131-7-08	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
8._GC-01-131-7-08	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
9._GC-01-131-7-08	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
10._RUQ_1312	_	_	_	_	CC	CC	GG	_	CT	AA	CC	GT	CC	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
1._CRU_156	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
2._CRU_156	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
3._CRU_156	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
4._CRU_156	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
5._GC-01-131-7-08	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
6._GC-01-131-7-08	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
7._GC-01-131-7-08	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
8._GC-01-131-7-08	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
9._GC-01-131-7-08	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
10._RUQ_1312	AA	_	AT	CT	AG	GG	AC	CT	GT	AA	_	_	X_X	X_X

Input profile: CRU_156

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Mars Center for Cocoa Science, Brazil

Location: 1708 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

1._CRU_156

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1708 6

Dapeng Zhang, 2016

2._CRU_156

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1708 5

Dapeng Zhang, 2016

3._CRU_156

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1708 3

Dapeng Zhang, 2016

4._CRU_156

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1708 2

Dapeng Zhang, 2016

5._CRU_156 GC-01-131-7-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

6._CRU_156 GC-01-131-7-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

7._CRU_156 GC-01-131-7-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

8._CRU_156 GC-01-131-7-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

9._CRU_156 GC-01-131-7-08

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

10._PNG_224 RUQ_1312

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25